User Guide

This page details how to use prolint2 to analyze molecular dynamics trajectories of membrane proteins. On the Prolint’s resources page you can get some simple membrane protein systems that you can use to test the tools before moving on with your own systems.

Getting started

• Overview
  • Improved features
  • Current performance
• Installation

Using the ProLint2's API

• Creating the PL2 object
  • Supported residue types
• Selecting the query and the database
• Getting the contacts
• Exporting the results

Using the command-line

• Calling prolint2
• prolint2 selection interface
  • Example 1
  • Example 2